rs36271708 SNP Detail

Summary

• ID
  rs36271708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40344602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGCCTTGA ACCCCCGTAA CCTGGCTCAC TGCCAACAAA
  ATGGATATGT CCTGTGCTAT GACTGAGGGT TCCCCACGTG AACACAGGGA TCTTCAGAAC
  Y
  ACCTTACCCT TCTGGGTGTC AGACTCTCGT GGATTTGCAG CAGAAAGGCA GAGATGAGAG
  ACAGATCATC ACCACCACAG TGACAGAGAA AGGAAAGCAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ
ss50677677	NES14011110	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ
rs36271708					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677677	NES14011110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40344602 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676831	regulatory region 676831	within coordinates
Tssr88924	transcription start site region 88924	1723 bp downstream
Tssr88925	transcription start site region 88925	1795 bp downstream
Tssr88926	transcription start site region 88926	1839 bp downstream
Tssr88927	transcription start site region 88927	1850 bp downstream
Tssr88928	transcription start site region 88928	1927 bp downstream