rs36272911 SNP Detail

Summary

• ID
  rs36272911
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6919384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCA CCCGGGCGGC CATCCTGCCG
  K
  AAAGGAGCTC CCGAAATGGC GCGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50594182	NES13645573	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	G	T	G		T	T	G
ss146019396	ENSMUSSNP5239733	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36272911					SNP	T	T	T	T	T	T	T	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50594182	NES13645573	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6919384 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	within coordinates
Cpgi10534	CpG island 10534	within coordinates
Gpr137	G protein-coupled receptor 137	within coordinates
Rr405833	regulatory region 405833	353 bp downstream
Rr405834	regulatory region 405834	16 bp downstream
Rr405835	regulatory region 405835	388 bp upstream
Rr543510	regulatory region 543510	within coordinates
Rr543511	regulatory region 543511	131 bp distal
Rr543512	regulatory region 543512	424 bp proximal
Tssr154697	transcription start site region 154697	126 bp downstream
Tssr154698	transcription start site region 154698	84 bp downstream
Tssr154699	transcription start site region 154699	527 bp upstream
Tssr154700	transcription start site region 154700	577 bp upstream
Tssr154701	transcription start site region 154701	607 bp upstream
Tssr157902	transcription start site region 157902	498 bp upstream
Tssr157903	transcription start site region 157903	186 bp upstream
Tssr157904	transcription start site region 157904	390 bp downstream