rs36273227 SNP Detail

Summary

• ID
  rs36273227
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52216343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTAACAA TCTCTTTGTT
  AGGAACAGCA ATGTGCTCAA ATAAAAATTC GTCCTTAGAT GTAGTCCTGT CAACAGTGCC
  AGGTGGGTTT CTGAGAGCTT CTCCTGATTG AAAGAGCCTC TTTCAATCCA TCTCCCTTCC
  TGTACTTAGA TGTTCAGCAA AGGCCAATGC AGCTCAGGCA GAACAGCCTG CTTCCAAGTA
  K
  AAGGTGACAG GCACGAGATC CAAAGGTTGG CTGAGTTCAT TCACCTTGCT CTGAGTACTT
  TTACCCTGGT GTTTAGAAAA CAACTCTTGC TACCTACAGA TACTTAACTC TTTTAAGAGC
  TCAAGATGAT CTACTTTCTA GCCCTCTCCC AAGATGTGCT TCTGTGGTGG TTTTTTTTTT
  TTTTTTTTTT TGCAAAGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50950444	NES13932110	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36273227					SNP	T	T	T	T	G	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950444	NES13932110	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52216343 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	1098 bp distal
Gls	glutaminase	within coordinates
Rr22237	regulatory region 22237	1743 bp distal
Rr33831	regulatory region 33831	within coordinates
Tssr6673	transcription start site region 6673	192 bp upstream