rs36273274 SNP Detail

Summary

• ID
  rs36273274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127921140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGGATCT GCTGGCCCCA TACGCCAAGG GTGGGAAAAT
  CGGTACGTTG GTTTTTGGTC CGTGTTTTCC AAATACAGTA AAGCATGGAG ACCCTTTTTT
  Y
  TTTTGAGAGT GCTTGAGCCT TCAGTGATGA TTAGCTTCTG ACTTTCGTTC TTCTGAATTT
  GCTGAAGCCA GATGCCGTTC CTGAGAAGGG GAAAATGGAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50944571	NES14144918	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36273274					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944571	NES14144918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127921140 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	1124 bp distal
Gm55458	predicted gene, 55458	18 bp upstream
Mir677	microRNA 677	15 bp upstream
Rr402340	regulatory region 402340	1959 bp downstream
Rr441097	regulatory region 441097	1988 bp distal
Rr441098	regulatory region 441098	1198 bp proximal
Rr441099	regulatory region 441099	1298 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	1055 bp downstream
Tssr96319	transcription start site region 96319	1962 bp downstream
Tssr96320	transcription start site region 96320	1333 bp downstream
Tssr96321	transcription start site region 96321	1286 bp downstream
Tssr96322	transcription start site region 96322	239 bp upstream
Tssr96323	transcription start site region 96323	760 bp upstream
Tssr96324	transcription start site region 96324	861 bp upstream
Tssr96325	transcription start site region 96325	1021 bp upstream
Tssr96326	transcription start site region 96326	1038 bp upstream
Tssr96327	transcription start site region 96327	1054 bp upstream
Tssr96328	transcription start site region 96328	1101 bp upstream