rs36273712 SNP Detail

Summary

• ID
  rs36273712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GAAAAGACAG TTCTGTAGAA
  Y
  AAGCTGAGGA CACCAGACAC GGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677578	NES14010807	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C		C	C	T	T	C	T	C
ss136330451	ENSMUSSNP1946743	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36273712					SNP	T	C	T	T	T	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677578	NES14010807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	367 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1309 bp distal
Rr676840	regulatory region 676840	480 bp distal
Rr676841	regulatory region 676841	878 bp distal
Rr676842	regulatory region 676842	1947 bp proximal
Tssr84449	transcription start site region 84449	1413 bp downstream
Tssr84450	transcription start site region 84450	824 bp downstream
Tssr84451	transcription start site region 84451	921 bp upstream
Tssr84452	transcription start site region 84452	949 bp upstream
Tssr84453	transcription start site region 84453	1690 bp upstream
Tssr88934	transcription start site region 88934	1350 bp upstream
Tssr88935	transcription start site region 88935	1299 bp upstream
Tssr88936	transcription start site region 88936	1278 bp upstream
Tssr88937	transcription start site region 88937	1214 bp upstream
Tssr88938	transcription start site region 88938	957 bp upstream
Tssr88939	transcription start site region 88939	922 bp upstream
Tssr88940	transcription start site region 88940	890 bp upstream
Tssr88941	transcription start site region 88941	601 bp upstream
Tssr88942	transcription start site region 88942	586 bp upstream
Tssr88943	transcription start site region 88943	558 bp upstream
Tssr88944	transcription start site region 88944	510 bp upstream
Tssr88945	transcription start site region 88945	493 bp upstream
Tssr88946	transcription start site region 88946	397 bp upstream
Tssr88947	transcription start site region 88947	368 bp upstream
Tssr88948	transcription start site region 88948	338 bp upstream
Tssr88949	transcription start site region 88949	738 bp downstream