rs36273726 SNP Detail

Summary

• ID
  rs36273726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90693502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAATCCC CTAAAAGCAC
  CCTGACAATC AGGTGCCATC TAGACACAAG CTATAGGTGA ACTCAAGTCC CCCAATGTTT
  TGAACCATGA AGCCCTCAGT CCTTCCCAAG ACCAATATTA CTTATCAGCA GAACTCTCCC
  TCTCCCAAGC CACCCTTCAT GTCTACATAG TGACATCAGC ACAGAGCTTA GTTCTAAACT
  R
  TCTGCCCACT CTGATAACGT AGAACTCCCT TTTGAGAATC TGATGGGTAT TCTGAGAATG
  GCCCTTGAGG CTAGTGTCTC CCCTGACTTC CCAGGTTCTG CACACCCCAT TGTCCCTCTT
  TTCTCCATCC TCCCTACAGA TCCACTAGCA AATCTACCCT CAATCTTACG TTCATAAGTC
  TGCTCACACC TAAGATCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51303238	NES14504274	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36273726					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51303238	NES14504274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90693502 () rs orientation: forward

Symbol	Name	Function Class
Col6a3	collagen, type VI, alpha 3	1080 bp downstream
Gm41918	predicted gene, 41918	1766 bp upstream