rs36274521 SNP Detail

Summary

• ID
  rs36274521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43814309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAAAGTT AACACCAATT
  TTTATCGCCC AGTATTATGA CTGTCAATGG ACCCATTAAC ATGAAAATGA TTCTAACCAT
  AAAAACCCTA AATTGCTGCG TCAAGTCCCT GCTTTTCTCA CCTGAGAGCT ATGGTTACCT
  GGTGCATCAT AACACTGATT GTAAATTAGG AAACTCATTT TACTTCTATC TGCAGAGACA
  Y
  GAGCTTCAAG AGGGCATGTT GGAGAGGATT TTACAATTCA AATTGAGTAG CACCGAATTT
  TACTCTTCAG TGAAGCTACT CTCTGTGATT ATAATCAGAA ACACACTCTG AGTTTACAGA
  TCACCTGTGT GTAGCTACTA TAACTAGAAA GATTCAGGAT AAGTTATGAT TTAAGCATCT
  AAGTTCTTTA GGACCAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51297957	NES13776753	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36274521					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51297957	NES13776753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43814309 () rs orientation: forward

Symbol	Name	Function Class
Gm35163	predicted gene, 35163	1880 bp upstream
Rr144146	regulatory region 144146	1635 bp proximal