rs36275099 SNP Detail

Summary

• ID
  rs36275099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58779971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TTTGGAGGAG ACACAGAGAC
  Y
  TGGAGCTCTT TGGGAAGTGG CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50903115	NES13490921	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36275099					SNP	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903115	NES13490921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58779971 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	964 bp downstream
Gm56672	predicted gene, 56672	within coordinates
Spmip5	sperm microtubule inner protein 5	within coordinates
Tssr159974	transcription start site region 159974	1255 bp downstream
Tssr159975	transcription start site region 159975	1278 bp downstream
Tssr159976	transcription start site region 159976	1729 bp downstream
Tssr159977	transcription start site region 159977	1738 bp downstream
Tssr159978	transcription start site region 159978	1761 bp downstream