rs36276144 SNP Detail

Summary

• ID
  rs36276144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132284043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGATAGG CATATCATTT
  AAGTTGCTCA GAGCAAGGCA GGTGAGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTTCCTCAT TCAGTATGGA AGACAACATC TGGCCAGCAG ATGATACCCA
  GAATGCTTCA GTGTGGGGAG AAATCCTGTG ATTTTTCAGA GACAGTGTAA TCAGCAGACC
  Y
  CAGACAGGAT GGTTTGAAAA CATAAAGGAT ATTTATTTCT TAGGAAGGTC CACCACAGCT
  GGCAGGCACT GCTTCTCCTG CTTCATGGAT TCCTCTCTCC TGTTCTAAGA AATCCCCACT
  GTGCTTGGAA AGGCCCTCGG GGAGGCTGGG CTGTGCAGAA TCGAACACAA CACTCCAGAG
  CCTTAAGGAA ATGACAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373320	NES14476209	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36276144					SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373320	NES14476209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132284043 () rs orientation: forward

Symbol	Name	Function Class
Rr12284	regulatory region 12284	43 bp distal
Tmcc2	transmembrane and coiled-coil domains 2	10 bp downstream
Tssr13633	transcription start site region 13633	1170 bp downstream
Tssr13634	transcription start site region 13634	1236 bp downstream
Tssr13635	transcription start site region 13635	1319 bp downstream
Tssr13636	transcription start site region 13636	1938 bp downstream