rs36277122 SNP Detail

Summary

• ID
  rs36277122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124717122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCGCGGACC GTGTGTCCCC GCCGCTCTGT TGACACACTC
  ACCACCGTCC TCCATGGCTT CCTCGAGCGA CTTCCCGCAA GGCGCCAGCA GCAAAGCACG
  R
  CCTGACAGCG CGTCGCCCTT CTCGCGCGTC AGTTCCGTCG TCTCCGGCGT GCGTGGCGTC
  ACTCGTCGGC GCCGGAAATC GAGTGCGCCT TGGCCCGTGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51196585	NES13821426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36277122					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196585	NES13821426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124717122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	within coordinates
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	89 bp upstream
Rr399368	regulatory region 399368	within coordinates
Rr620506	regulatory region 620506	within coordinates
Rr620507	regulatory region 620507	62 bp proximal
Rr620508	regulatory region 620508	92 bp proximal
Tssr48907	transcription start site region 48907	56 bp upstream
Tssr48908	transcription start site region 48908	75 bp upstream
Tssr53375	transcription start site region 53375	15 bp upstream
Tssr53376	transcription start site region 53376	within coordinates
Tssr53377	transcription start site region 53377	24 bp downstream