rs36278237 SNP Detail

Summary

• ID
  rs36278237
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10612889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATTTACCA CTTCGATGGC ACCTCACGCC CCTTTCAGAG
  CCCCCTTTGG CTTAGCTATT AAGTTGTTCT GTAGATCCCA GCTGCCGGAT TCTCTGCCTC
  W
  GCTGTTGCTA TCATCGTTTC TATGTGTGAC ATCACTGTTG GTCTGGTTTG TCTTCACTGG
  TTTTGACTTC TGAGAGGAAA AAAGGACTTG GCCCTAGGGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss50601042	NES13642643	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs36278237					SNP	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601042	NES13642643	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10612889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	832 bp distal
Cpgi10617	CpG island 10617	166 bp distal
Rr362969	regulatory region 362969	within coordinates
Tssr155079	transcription start site region 155079	1280 bp downstream
Tssr155080	transcription start site region 155080	1213 bp downstream
Tssr155081	transcription start site region 155081	1201 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates