rs36279001 SNP Detail

Summary

• ID
  rs36279001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97873269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACCATGA GACCAAATAA ACCTTGCTTT CCTGATGATG
  TAACCTACGT CAGGTGTTTC ACTTCCATAG CACAAGGCTG ATACTGTTTG ATTTCTGGTC
  R
  CCAGTGGATT CCACAAAGTG CCCAAGTTTA CAAGAGAGGC AGGTCTTTTG TGTGTGTGAG
  TGACATCACC AAACCAGGCA GTGTGACTTC AGCATCCTGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763572	NES14551324	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36279001					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763572	NES14551324	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97873269 () rs orientation: forward

Symbol	Name	Function Class
Col2a1	collagen, type II, alpha 1	214 bp downstream
Rr508999	regulatory region 508999	1595 bp distal
Rr509000	regulatory region 509000	1423 bp proximal
Tssr4707	transcription start site region 4707	1500 bp downstream
Tssr132910	transcription start site region 132910	215 bp upstream
Tssr136189	transcription start site region 136189	280 bp downstream
Tssr136190	transcription start site region 136190	311 bp downstream
Tssr136191	transcription start site region 136191	524 bp downstream
Tssr136192	transcription start site region 136192	630 bp downstream
Tssr136193	transcription start site region 136193	672 bp downstream
Tssr136194	transcription start site region 136194	720 bp downstream
Tssr136195	transcription start site region 136195	736 bp downstream
Tssr136196	transcription start site region 136196	755 bp downstream
Tssr136197	transcription start site region 136197	768 bp downstream
Tssr136198	transcription start site region 136198	1290 bp downstream
Tssr136199	transcription start site region 136199	1336 bp downstream
Tssr136200	transcription start site region 136200	1354 bp downstream
Tssr136201	transcription start site region 136201	1410 bp downstream
Tssr136202	transcription start site region 136202	1464 bp downstream
Tssr136203	transcription start site region 136203	1889 bp downstream
Tssr136204	transcription start site region 136204	1982 bp downstream