rs36279242 SNP Detail

Summary

• ID
  rs36279242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39631607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCAGCC CTAAAATTAT
  TTTGATTAAA ATACTTTAAT AGGTTATAGA ATGACTTACT AATTAACATT TTTGATACAG
  ATAATAAAAT CTATGAGTTC TGGCCTAAAG AGCCTGGCCA GAGGCTAGAT TATAAACTCC
  TAAAAAGATT GTAGCTGCCT CAGAAAAGAT TCTCAGGAGC AGAGAAGTGA TTACTGCTTT
  Y
  GGGAGGATAC AGTAAGGCTC AGCCTAAGTG TCAACTGGCC ATGGAAAGTC CAACATGGAC
  CAAGTTCTCT TCACATACTG CTCAGCGTTT TACCCCATAG TATAAAAGCT AACCAGCAAT
  ATTTGGTTGT TATTAGACAA GAAAGACATT GTTGAGATAA CAAGGGAAAT CATAAAAGAA
  TGGTAAGAAA ATACAGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616032	NES14841050	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36279242					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616032	NES14841050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39631607 () rs orientation: forward

Symbol	Name	Function Class
Braf	Braf transforming gene	within coordinates
Fth-ps2	ferritin heavy chain, pseudogene 2	885 bp upstream
Tssr1816	transcription start site region 1816	869 bp downstream
Tssr60501	transcription start site region 60501	556 bp upstream