rs36279339 SNP Detail

Summary

• ID
  rs36279339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84989377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGAGACT TTTGAATTAG
  GAATGATCAA CCCAAGCAAA GATTAACATC TCAAAAAATA ATATAAACTC TCATTGTGTG
  GAAACTTTAA TTTCTTCTGC CTCAATGTTG AGCCACCCCT CTCACTTACT GTTCTAACTA
  TACACTTCCA GAAAGGAGAG AAGGGAATAC ACTTAACTAT TTCTTCTTCC CTCATGAAAA
  Y
  CAGCCAACCT GCTTACCTCT GTACTTCCTC CTCTGTCTGC TCTACACAGA CAGAGCTCAT
  TTGCAGCTAA CCCTGCTTAT TGTTTCACAA ACTTCTGCTC TACATCATGT AATTTTCCCT
  TTCCATCAGA TCATGTCTGT ATAAAGATCA GTGGAAAACT TGCCCTGAAC TGCATGTCCC
  CTTCCAGCTA CCATAGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51357283	NES13739725	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36279339					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51357283	NES13739725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84989377 () rs orientation: forward

Symbol	Name	Function Class
Exoc6b	exocyst complex component 6B	within coordinates
Rr379698	regulatory region 379698	828 bp downstream