rs36280564 SNP Detail

Summary

• ID
  rs36280564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70442112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGACTTA CATCACCTTT
  TGGACTGGGC CAAATCAGGC TTGTATGTGC CTGTGGGGTT TGTGGGGGTT CCAAGAAAGG
  ACACCAGATA TCCCAGGTGG TGTCCTGTGT GTGGTAGGAT ATGTTCAGTG CTGTGAATGT
  GATGGGGTGG GGGAGGGCAG GGTGGATCAT GTGAGGAGCT CGGGAATGTC AGGACTGTGT
  R
  CAGCAAGGGG TCATATGGAC AGCACAGGAG CTGTGGGAAG GGTACAGAGG AGGCCTGCAG
  GGCCTTATTT TCTGTGCTCA CATCCTGCTC AGGCATGGAC AAGGAGACGA GGAAGGCTAG
  GGTCAGTAAG TCTCTGGTCT GTATTTGTGG GGATTCCTTC TGACATCTGA GCAGCCTTTT
  GGGGACCCAG CCAATCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51532213	NES14630567	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36280564					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532213	NES14630567	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70442112 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6688	CpG island 6688			964 bp proximal
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			661 bp upstream
Rr494880	regulatory region 494880			533 bp distal
Rr494881	regulatory region 494881			within coordinates
Rr494882	regulatory region 494882			574 bp proximal
Rr494883	regulatory region 494883			672 bp proximal
Rr494884	regulatory region 494884			1349 bp proximal
Rr494885	regulatory region 494885			1485 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			1256 bp downstream
Tssr126404	transcription start site region 126404			508 bp upstream
Tssr126405	transcription start site region 126405			562 bp upstream
Tssr126406	transcription start site region 126406			581 bp upstream
Tssr129550	transcription start site region 129550			1210 bp upstream
Tssr129551	transcription start site region 129551			1197 bp upstream
Tssr129552	transcription start site region 129552			1183 bp upstream
Tssr129553	transcription start site region 129553			1163 bp downstream
Tssr129554	transcription start site region 129554			1210 bp downstream
Tssr129555	transcription start site region 129555			1322 bp downstream
Tssr129556	transcription start site region 129556			1375 bp downstream
Tssr129557	transcription start site region 129557			1419 bp downstream
Tssr129558	transcription start site region 129558			1448 bp downstream