rs36280613 SNP Detail

Summary

• ID
  rs36280613
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128811286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCAGCT TGTGGTAACA
  CTTCCCAGGT ATTTAGAACC ATTTGGTGCT TCCTGTACAG TCCCTCACTC CACAGCTGCC
  ATCCCTCCCA CTGCTGTCCC TTCAGGACCT GATTGTTCTC GCAGGAAATA TGTGAATGGC
  AGTCTCTTGC GTTACGGCAC CATCTAGTGG TGCCGTTGTG GAACAGCTTG CTTGTCACCC
  S
  TGGAAGAGTT TGAGCTGTTT TTCAGATTGT GACTTCTAGG GCTTACAAAG TGAAGGCTCT
  GGGTCTATAA TCCCATCATT TTGGTGGCAG AGACAGGAGG ATCATTGCAG GTTCGAGGCC
  AACCTGGTCT ACGTAGCAAG TTTAAAACCA ACCAGAGACC CTATCTCAAA GAAATAAAAA
  TAAAAATAAA GGAAAAAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843747	NES14705207	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36280613					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843747	NES14705207	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128811286 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	1138 bp downstream
Cpgi16665	CpG island 16665	1626 bp proximal
Gm71554	predicted gene, 71554	1130 bp downstream
Piwil1	piwi-like RNA-mediated gene silencing 1	1849 bp upstream
Tssr1644	transcription start site region 1644	1938 bp upstream
Tssr48983	transcription start site region 48983	1864 bp upstream
Tssr48984	transcription start site region 48984	1903 bp upstream
Tssr48985	transcription start site region 48985	1946 bp upstream
Tssr53471	transcription start site region 53471	1789 bp downstream