rs36281962 SNP Detail

Summary

• ID
  rs36281962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20180091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGACGTA TATCTTCAGA
  CCTGGTGTCG TCCGCCACGT TCCTGACGAA CAAAGACGTG TTGGGGGGGG GGGGGGCGCA
  GGTATCAGGA CATGGCGGCG GCGGGACTCT GGGCCGGCGG CGCTAACGAG CTCGGGCAAA
  CCGGCGGCGG CTCACATCCA CTCACATCAC ACTCGCACAG ACGCAGAGGG CTCCGCTACG
  R
  CAACTCCTGT ATCTTTATTA AAGTTCTTTT TTGTTGTTGT TTTGGTTTGG TTTGGTTTGG
  TTTTTTGTTT TGTTTTTGTT TTGAGACAGG GTTTCTCTGT ATAACTCTGG CTGTCCTGGA
  ACTCACTTTG TAGACCAGGC TGGCCTTGAA CTAAGAAATC TGCCTGCCTC TGCCCCCCAA
  GTGCTGGGAT TAAAGGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51078863	NES14360367	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36281962					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51078863	NES14360367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20180091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5307	CpG island 5307	within coordinates
Gm5446	predicted gene 5446	117 bp upstream
Gm60857	predicted gene, 60857	within coordinates
Rr388071	regulatory region 388071	1239 bp upstream