rs36282439 SNP Detail

Summary

• ID
  rs36282439
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4839648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    taaaaaaaa aaaaaAAAAA TCCTGTGCTT
  AATGGCGATC CCTTTCACTA GCACATCGGT CCATATATCC CTTCTTCCGT GCTGGCCATC
  AACCATAAGA AGTACTGTTA TCCACACAAT TTTGCTGGCA AGATAACTGA AGCTCACAAG
  W
  ATTCCTGGCT AACTTGGTTT ATGCACCAAG GACCAAGCCC TTCAAAACTC CTTCCTTAAT
  CCACTTTGCT CCCATGTTCA ACACTGGCTT GTGACTGTAC ACTCTCAGCA ACTTCACTCT
  GTGTATAATA TACCAAAAAG TAAGAGCTTG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss50908952	NES13484809	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	T	T	T		A	T		T
ss148476115	ENSMUSSNP5902461	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319612280	CHEV_1_4759506	CHEVERUD	SCREENING_POP	f	SNP								T			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs36282439					SNP	A	A	A	A	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908952	NES13484809	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4839648 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	1706 bp upstream
Rr407421	regulatory region 407421	755 bp distal
Rr407422	regulatory region 407422	862 bp distal
Rr407423	regulatory region 407423	533 bp proximal
Rr407424	regulatory region 407424	630 bp proximal
Tssr5799	transcription start site region 5799	1669 bp upstream