rs36283700 SNP Detail

Summary

• ID
  rs36283700
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAAAGC CCCGCTTTAG
  AGCTAGGACA GGTAGGTAGG TAAGCAGCAG GCTCCCCCTA CCTCCTAAGC CCCACCCACC
  CGGGGGCGGG GCCTCAGCCC CTCCCACACA TGCGCGCTGG GCCTCACCGA CCCCTGCCCA
  GCCAGCCTCC CCGCCCCCAA CGGGAGCCCG CGCAGGTGGC AGCGCGCCTA CCGTGAGCAC
  S
  GCTGCAGGAG TCCCGGAGGT CCGTGCTCGG CGCAGGCATG ATCGGCCAGA AGACCCTATA
  CTCTTTCTTC TCTCCGACCC CCACAGGGAA GCGGACCACG CGCAGCCCGG AGCCGGTCCC
  AGGGAGCGGA GTGGCGGCCG AGATCGGCGG CGATGCCGTG GTGAGACGAG CGGGGTAGCG
  CGGGACGCGG GGGTACGGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51798729	NES14715525	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36283700					SNP	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798729	NES14715525	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	within coordinates
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1718 bp downstream
Rr617827	regulatory region 617827	1922 bp distal
Rr617829	regulatory region 617829	69 bp distal
Rr617830	regulatory region 617830	239 bp proximal
Rr617831	regulatory region 617831	1038 bp proximal
Tssr48056	transcription start site region 48056	89 bp downstream
Tssr48057	transcription start site region 48057	21 bp downstream
Tssr48058	transcription start site region 48058	692 bp upstream
Tssr48059	transcription start site region 48059	719 bp upstream
Tssr48060	transcription start site region 48060	1745 bp upstream
Tssr52695	transcription start site region 52695	240 bp downstream
Tssr52696	transcription start site region 52696	1121 bp downstream
Ung	uracil DNA glycosylase	within coordinates