rs36283800 SNP Detail

Summary

• ID
  rs36283800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97599238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGATAG TTTCTGATCC
  TTACGCCACA TCATCTGCAC CAAGTCTTTT CTCACACTGC TGCCAGGGAA AGAGGCCAGC
  CACACTTAGC ATTTGTGATA ATCATAGAGA ACCAGCCAGA GATTGGCTAT CTTCCCCCTC
  AAGAGGCAGT GTTCATTTTC AGGTTTCCTT CTGCATCAGT GAGCCAAGAT AAGGATTGTT
  Y
  GGATCCTTAC AGACAAGGAT GCTTCCCACC TCACAGTGTA GCGAGGGCCG TCTATAAGGC
  TCTCCTCTGC CTTCTTGTCT ATGGAGCCCC TGAGGAAACG TGAGTGCACA GCAGGTCTCA
  CAGGCAGACC CCAAGTGCCT CTGCCCTCCA GAGGAGGCAA CTGCACTCCA TTTCCTGGCC
  TACCCATCCC ACATAAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50996622	NES13919778	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36283800					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50996622	NES13919778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97599238 () rs orientation: forward

Symbol	Name	Function Class
Gm66506	predicted gene, 66506	763 bp downstream
Mir7225	microRNA 7225	1360 bp upstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Tssr30803	transcription start site region 30803	1083 bp downstream