rs36284801 SNP Detail

Summary

• ID
  rs36284801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52216073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACTACC AGAAACACTT
  TTCTAGACTT CTGATAGTCC TTAGGTTTCT CCACTGGCTA CTTTTTCCAA GTGCAGTTCC
  CTACTGCTCT ATCCTACCCA GAAGTTTAAG GGCTCAGCCC AAGGTCTGCT TCACTTCTCA
  TCTGTCATAG TCTCCTTGAA CAGTAACTTC GGAGCTCTAA CTGCCCTGTT CTTATGTTCA
  Y
  AAAGTAAAAG CTCGGCATAC AATCCCCTAC AGCTCATACA CTGCTCCTTG CCAGATTTAG
  TGCCCTCTTG CAGTAACAAT CTCTTTGTTA GGAACAGCAA TGTGCTCAAA TAAAAATTCG
  TCCTTAGATG TAGTCCTGTC AACAGTGCCA GGTGGGTTTC TGAGAGCTTC TCCTGATTGA
  AAGAGCCTCT TTCAATCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50950446	NES13932106	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36284801					SNP	T	T	T	T	C	T	C	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950446	NES13932106	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52216073 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	828 bp distal
Gls	glutaminase	within coordinates
Rr22237	regulatory region 22237	1473 bp distal
Rr33831	regulatory region 33831	within coordinates
Tssr6673	transcription start site region 6673	462 bp upstream