rs36284899 SNP Detail

Summary

• ID
  rs36284899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACCCAA ATACAGACCC
  TGGCTTAAGG CCCTGTCCAT ACAGTAGGTT TAGCTTGGCT ACACCAAAGG AAGCCATACA
  GAGGCTAATA TCAGAGTATT CTTGGAAGAG ACAGGAGAAA ATGAAAGCCA GTTTCTGCTC
  TTACCTTATG TGCTTGTGTT CAGACTCCCA AACATCAGGA GTGTCAGATA AACTGGTCTG
  R
  ATCTCTGTCT GAAGCATGGA ACTGAAAAGA ATGTAGTTTC AGGGAAGAAA GGCAATAGAA
  GGAAGCCTGA GAATATCTTC AAAGGGTCAG ACTCAATTTA CTTTCTAAAG AAGTAGCTAG
  GAACTAGGGA ATAACTTAGA AACAACAAGA TTGTATATAT GTGCATCCTG GCCCCATTGT
  TCCTTATCTG TAGGGATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676659	NES14820447	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	G		G	G	A	G		A
ss321815799	CHEV_6_70676122	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36284899					SNP	A	A	G	A	A	A	G	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676659	NES14820447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703112 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	318 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	307 bp upstream
Rr158	regulatory region 158	177 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	693 bp downstream
Rr399685	regulatory region 399685	281 bp downstream
Rr399686	regulatory region 399686	383 bp upstream
Tssr1880	transcription start site region 1880	722 bp upstream
Tssr56956	transcription start site region 56956	295 bp downstream
Tssr56957	transcription start site region 56957	302 bp upstream
Tssr56958	transcription start site region 56958	349 bp upstream
Tssr56959	transcription start site region 56959	367 bp upstream
Tssr56960	transcription start site region 56960	390 bp upstream
Tssr56961	transcription start site region 56961	404 bp upstream
Tssr56962	transcription start site region 56962	412 bp upstream
Tssr56963	transcription start site region 56963	461 bp upstream
Tssr56964	transcription start site region 56964	476 bp upstream
Tssr56965	transcription start site region 56965	482 bp upstream
Tssr56966	transcription start site region 56966	493 bp upstream
Tssr56967	transcription start site region 56967	508 bp upstream
Tssr56968	transcription start site region 56968	532 bp upstream
Tssr56969	transcription start site region 56969	568 bp upstream
Tssr56970	transcription start site region 56970	581 bp upstream
Tssr56971	transcription start site region 56971	601 bp upstream
Tssr56972	transcription start site region 56972	627 bp upstream
Tssr56973	transcription start site region 56973	665 bp upstream
Tssr56974	transcription start site region 56974	697 bp upstream
Tssr56975	transcription start site region 56975	730 bp upstream
Tssr61321	transcription start site region 61321	354 bp downstream
Tssr61322	transcription start site region 61322	519 bp downstream
Tssr61323	transcription start site region 61323	534 bp downstream
Tssr61324	transcription start site region 61324	624 bp downstream
Tssr61325	transcription start site region 61325	690 bp downstream
Tssr61326	transcription start site region 61326	725 bp downstream
Tssr61327	transcription start site region 61327	739 bp downstream
Tssr61328	transcription start site region 61328	830 bp downstream