rs36285365 SNP Detail

Summary

• ID
  rs36285365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCATGA TCTGCGGGCT
  CTCTTTGGGA GCCCTGGAAG TGTCTCAGGG AGGAAAATGA TCCCCAAACC CACCTCTCAG
  GTTCTGGTTC TGCTTGCTCA GACGAATCTG AGTTCACTGA GTCTGCTGGA GCTTTCCTAA
  AGCTCCACTA GCCAGTAACT AACTATGTTG CCAATACTCC AATCTCCACT TTCCAGGCAC
  R
  CAGCCAGGTG GCAGTGAAGA GCTACAAGGG TCTTCCGTGC TCATAAAAAT GACTGCCTCT
  AGCTTAAAGA TTCAGAGTAA ATTTCCACCT ATAAAAAGAA GCTGCGACGA GATTCTTGTG
  TACGAAACCA AGGGCAAAAT ACTGAGGGTG GAAAGGGAAA GTATTCGCCT CAAAAGTAAA
  CTTTTTAATA GTACATAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674824	NES14008197	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36285365					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674824	NES14008197	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	452 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	636 bp distal
Rr676657	regulatory region 676657	531 bp distal
Rr676658	regulatory region 676658	312 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	within coordinates
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	626 bp upstream
Tssr88821	transcription start site region 88821	675 bp upstream
Tssr88822	transcription start site region 88822	647 bp upstream
Tssr88823	transcription start site region 88823	620 bp upstream
Tssr88824	transcription start site region 88824	597 bp upstream
Tssr88825	transcription start site region 88825	578 bp upstream
Tssr88826	transcription start site region 88826	486 bp upstream
Tssr88827	transcription start site region 88827	404 bp upstream
Tssr88828	transcription start site region 88828	374 bp upstream
Tssr88829	transcription start site region 88829	356 bp upstream
Tssr88830	transcription start site region 88830	328 bp upstream
Tssr88831	transcription start site region 88831	295 bp upstream