rs36286100 SNP Detail

Summary

• ID
  rs36286100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16725851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAGCC CTTGCGGGGT
  GTGGTAGGGG TGTCTTGGCT TCTCTTCAAA GCACCTCTGC TTTGGGGAAG AGGCCTAAGG
  AAGGCTGGAG GGGCCAGAGG AGGGGCTGCC TCTGTGCCTG CTGTGTGGAA GTTCCCAGCT
  TCTCCCCTAA GCTCAGCCAG GGCCCCTTGT TGCCTTGGAG ACCACTAGTC ACGTTCAAGG
  Y
  CTTGGGCTGA GCAGCTAGAA TTCCATGTCG TGAAGAGGAG GAAAGTTCAC CTAAGCAGAG
  CCAGCAAAAG CGTCCTCCCT CCTACCCCCA ATGGGGACGT TGAAGCCAGG ACAGGACCCA
  AACAAAGCAC CCCACCCCGA CTCCAAACCT GAACCTGAAA AATCCTCTCC TGCACCTTCT
  TTTTCTCCGT CCCCTTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51882089	NES14903396	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	T	C	C	C	T	C	T	C	C
ss148402081	ENSMUSSNP3423764	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36286100					SNP	T	T	C	C	C	T	T	T	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882089	NES14903396	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16725851 () rs orientation: forward

Symbol	Name	Function Class
Ccdc8	coiled-coil domain containing 8	1976 bp upstream
Rr368244	regulatory region 368244	1600 bp downstream
Rr642837	regulatory region 642837	1252 bp distal
Rr642838	regulatory region 642838	292 bp proximal
Tssr64672	transcription start site region 64672	1872 bp upstream
Tssr64673	transcription start site region 64673	1939 bp upstream