rs36286498 SNP Detail

Summary

• ID
  rs36286498
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127872542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTATTCC CTTCAGAAAT
  GCCCGGTGAA GCCACAGAAA CCGTCCCTGC TACAGAGCAG GAGTTGCCAC AGCCTCAGGC
  TGAGACAGGT AGGTGCCCGT AGCTCTTTTG CTGTTCGTGA AAATTAATCC TAAAACCATT
  TGGTGGGTAA AGGGGACGGA TACCTTTCTG CCTTTTGTAG TTTACTGACT TTAAAGAAAA
  W
  TTTGAAATGG GATTGTAGCT TTAGTAAGAG ATCTAATTGT TACCTTGCTT AGGGGAAGGG
  GACTCTTCGG GGAAGAAAGT AAAAGATTGT ATCTTTGAGA TTTATATGCG GGTTCCCTAG
  GCTGCTCTGT GAATACACCA GCTGCTTGAA AAGCTCTTCT GTGGAATCTA CACATAGGAA
  ACTCGAGTAG GGAAGGGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50944827	NES14145740	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36286498					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944827	NES14145740	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127872542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	219 bp distal
Gm66417	predicted gene, 66417	1092 bp upstream
Naca	nascent polypeptide-associated complex alpha polypeptide	within coordinates
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96290	transcription start site region 96290	1335 bp downstream
Tssr96291	transcription start site region 96291	1318 bp downstream
Tssr96292	transcription start site region 96292	1293 bp downstream
Tssr96293	transcription start site region 96293	1153 bp downstream
Tssr96294	transcription start site region 96294	1079 bp downstream
Tssr96295	transcription start site region 96295	1060 bp downstream
Tssr96296	transcription start site region 96296	1038 bp downstream
Tssr96297	transcription start site region 96297	1018 bp downstream
Tssr96298	transcription start site region 96298	434 bp downstream