rs36287374 SNP Detail

Summary

• ID
  rs36287374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145881691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCGTGGCA CGAAGAGCTC TTTCTCTTGT TCCTTCTTTA
  TGCTAGGGTT AAGTTGAAGT GCACCCCTAG CCTGTGGCCC CACTTGGCTT TTGAGAGAGA
  Y
  CCGGCAGAGG CTGTCCCAAC CCACCCAGGG AGTCTCCTAG AAGCCATGTG GGGCCATGCC
  TCTTGTCAGC AGGATGAGGG CTGTGGGCAG GGTGTCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51464082	NES13986196	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T	C	T	C	C		T	T	T		C
ss133984576	ENSMUSSNP1713538	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss322075175	CHEV_6_145884485	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36287374					SNP	C	C	C	T	C	C	T	C	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51464082	NES13986196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145881691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	1524 bp distal
D6Mit200	DNA segment, Chr 6, Massachusetts Institute of Technology 200	521 bp distal
Rr641247	regulatory region 641247	1833 bp distal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	1829 bp downstream
Tssr59565	transcription start site region 59565	1804 bp downstream