rs36287809 SNP Detail

Summary

• ID
  rs36287809
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127871886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGGGCAA AATGGGGTCT
  GCGCTTTGGG TCCCAGCAAC AGCAGGACAG GAGGGCCCCG GGTCCGGCTC CCGGTTTAAG
  GCGTGGGGAC GCGGGAACCA TTGCGGTGGA GCCGGAGAGG CTGGGCGCGT CTGCAGTTGG
  GAAGGGCGCC ACGGGGATCT GGACGAGGAG GTTAAGGGGG TCACAGCCTT AACTCGCAGC
  K
  TCGCTCGTCC TGGGGCACCC CGTGTTCTTC TTGCTCTGCG AAGTGGTCCT TAGCGAGTCG
  GGGGGTCCCA GACTCAGCGG CGTGAAGGTG GGGACCGGAA GGGGGCCCAG AGTAGCGCCT
  GGACGCTCAC GGTTAGGAGT CAGACCTTGG GATTGCTGCC CTTGTGGGAT CGATCGGAAG
  AGTGACAACG AGGATCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50944835	NES14145736	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		T	G	G	T		G
ss323531426	CHEV_10_127473073	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36287809					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944835	NES14145736	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127871886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	within coordinates
Gm66417	predicted gene, 66417	436 bp upstream
Gm66418	predicted gene, 66418	1977 bp downstream
Naca	nascent polypeptide-associated complex alpha polypeptide	within coordinates
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96290	transcription start site region 96290	679 bp downstream
Tssr96291	transcription start site region 96291	662 bp downstream
Tssr96292	transcription start site region 96292	637 bp downstream
Tssr96293	transcription start site region 96293	497 bp downstream
Tssr96294	transcription start site region 96294	423 bp downstream
Tssr96295	transcription start site region 96295	404 bp downstream
Tssr96296	transcription start site region 96296	382 bp downstream
Tssr96297	transcription start site region 96297	362 bp downstream
Tssr96298	transcription start site region 96298	201 bp upstream