rs36287926 SNP Detail

Summary

• ID
  rs36287926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113658910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTACCTG GCTCGCTCAG
  AGACTTGAAT ACAAGAGTGC CATGCTCCAC AGCCTCCAGC CGGGCTCCCG GGGTGATCAG
  AAAGCCACTA AGTGGCCAGA GGCTGAAGCC TGACAGCCAC GACGCTGCAG AGTGACCCGG
  GGTGGACCGT GTGCAGAACG GGCCAAGGAG TAAGAAGGAT GTGCCCTGTG GCTGATGGAA
  Y
  TGGCCTCAGG GCAAAGAGGA CACCCAAGAC TTATCCAGGT ATCCATGGAA ACCCAAAGGT
  GGAGACTTGA GCTTCCTTTC CCTGGCTGTG ACTGTGAGTG GCCCTGGAGA CAGCTGGGGT
  GTAAGACACG GGTGGCTGGA AGTATAACAT CTAGCGGTGT GAGGTGAGGA GTGCCGCATC
  TGTGTGAGGT GGGTTCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51794397	NES14722574	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36287926					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794397	NES14722574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113658910 () rs orientation: forward

Symbol	Name	Function Class
Tssr48022	transcription start site region 48022	199 bp downstream
Tssr48023	transcription start site region 48023	139 bp downstream
Wscd2	WSC domain containing 2	within coordinates