rs36287990 SNP Detail

Summary

• ID
  rs36287990
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72722421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCAAAG TGAGCCCTAC
  CTTCAGATGC CTATCACAAC CATCTCAAAG GTTCTGAAAA CTAGACAGGA TGGGTGTCAA
  ACACAACGAG ACCAGGGCAT CAGTGAATGC TGCACTATGC TCAGGTCCTG GAGGTATGAA
  AAACACTAGC ATGAAAAACA CTGGCAGGTC TCAGGTCTTT ATGTCTATCA AATGGACAAA
  S
  ATCCGAAGGC TGGAGAGACA GCTCAGCAGT TAATCGTACT TGCTGCTCTT ACAGAAGACC
  CAAGTTTGGT TTTCAGCATC CACAGTGGGC AGCTCACAAC TAACTGCCTC TTATTCCAGC
  TTCCGGGGGA TCCAACACTC TCCCCGGGTC TCTTCCCACG CTCGCAAGTG TGCACTCACA
  CACATGCACA CGTATACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51693279	NES14824316	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36287990					SNP	C	C	C	C	C	C	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51693279	NES14824316	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72722421 () rs orientation: forward

Symbol	Name	Function Class
Gm31249	predicted gene, 31249	within coordinates
Gm67726	predicted gene, 67726	within coordinates
Rr632292	regulatory region 632292	596 bp proximal
Rr632293	regulatory region 632293	1669 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates
Tssr57163	transcription start site region 57163	1380 bp downstream