rs36289487 SNP Detail

Summary

• ID
  rs36289487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:45281371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAATTA TAATAATATT
  TAGAGACCTT GCTAAGCATA TATAGTGTAT CTAGCATCTC AATTTGTGAT TGTAAATTGT
  TTGTGTTTTT TTAAGCAACC ATCTGAAATA CATGCTTTTA CAGTTTTAAA GTTTGGGTTA
  ATACTGGAAA TTGTTGTAAA ACTTACCATG TAGTTCAGAT GATGTCTTCC TCTGTTTGTT
  R
  TTTGAAAAAG GTAATAGGGC ATCAATGGGG AGGAATCATG ACTGGCCTTT ATCCCATTTC
  ATGCCCAATT TGCTCATGGA GACCTGAAGT ATTGTGTCTA TTTACCTTGG GAATCCTCTA
  ATGGAGCCTC CCTAACACAA TTTGCCATAG CATGGCTACA CCCTCCACTG GAGCTGAAGT
  CTCACATTTC AGTGGGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51301019	NES13767449	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36289487					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301019	NES13767449	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:45281371 () rs orientation: forward

Symbol	Name	Function Class
6330419E04Rik	RIKEN cDNA 6330419E04 gene	1687 bp upstream
Cntnap2	contactin associated protein-like 2	within coordinates
Gm43869	predicted gene, 43869	1930 bp downstream