rs36291598 SNP Detail

Summary

• ID
  rs36291598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8927861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGGAACT ACACCCAATC CAGGGTGGGT GGAAGGTGGA
  GAGACAGTTG GGGTGGTGCC AGCCTCTCTA AGAGTCTTTT CTTCAGTCAG GCTGACAGCT
  R
  AATTTTACTA TCTTAAGTCT TCTTCCCCAG AGTTTTTCTT TGACACTGAG TCCACACAAC
  TTAGAGCTTT TGTGTGTGCT TATTATTATG ATGATCCTTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50609168	NES13644099	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36291598					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609168	NES13644099	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8927861 () rs orientation: forward

Symbol	Name	Function Class
Gm59132	predicted gene, 59132	61 bp downstream
Mta2	metastasis-associated gene family, member 2	within coordinates
Rr359578	regulatory region 359578	740 bp proximal
Rr363780	regulatory region 363780	1939 bp proximal
Tssr154900	transcription start site region 154900	1573 bp upstream