rs36292100 SNP Detail

Summary

• ID
  rs36292100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34610796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATATCCT GACACTAACT
  CTAATTCTGG CTTGCTCTAT TCCGGGGGAG CTAATACATC CAGGCAGCTG GGAACTGGCA
  ATGAGAATAA CCTGCACAGC ACAGCACAGC ACAGCATGTA TCTTGGTGGA AAGGATCGTT
  AGCCTGTCAC TCCTCCCACA CACCTGCTGC CAAAGCCCAG GGTGTGCATG AGTACACGTG
  Y
  GGGCTATGCC AGGGTCAGTC CATGATCCTC CCACTTCACC AGCTTCTGCA ATTGGTGATG
  ATTTTGCCTG TCCAGCTACC TCTGCGTTCA GAAGGTGGCT TCCGTCTGAA GATTTCTTAA
  CCTTTACTGA GTTACCAAGG AAAGAATTTG ATAGTCCAGA ACGCTGATAG GAGGTTTTGA
  ATAGATGTGA AATGTACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51236969	NES14283268	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36292100					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51236969	NES14283268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34610796 () rs orientation: forward

Symbol	Name	Function Class
Gm19225	predicted gene, 19225	within coordinates
Rr36346	regulatory region 36346	1445 bp proximal