rs36292176 SNP Detail

Summary

• ID
  rs36292176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAACTT CAGGATAGAA
  AAGGGCTGAA GTCAAGTTCA GCTCCTAAAA TGGATGTGGG AGCAAACTTT GAAGATAAAC
  TGAATGACCC AGAGGATGAA ACAGCGCAGA TCAAAGAGGG GCCTGGAGCT CTGAGAAGAG
  AAGGAGACTC ATCCGTGTTG AGTTTCCACA AGTACTGTCT TGAGTTTTGC AATAAAAGTG
  R
  GATAGCAGAG TTGAGTGAGC CGTAGGCTGA GTTCTCTCTT TTGTCTCCTA AGTTTTTATG
  ACTACAAAAA TCAGTAGTAT GTCCTGAAAT AATCATTAAG CTGTTTGAAA GTATGACTGC
  TTGCCATGTA GATACCATGG CTTGCTGAAT AATCAGAAGA GGTGTGACTC TTATTCTAAA
  ATTTGTCACA AAATGTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676707	NES14820424	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36292176					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676707	NES14820424	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701433 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1997 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1986 bp upstream
Igkj1	immunoglobulin kappa joining 1	1850 bp downstream
Igkj2	immunoglobulin kappa joining 2	1495 bp downstream
Igkj3	immunoglobulin kappa joining 3	1189 bp downstream
Igkj4	immunoglobulin kappa joining 4	864 bp downstream
Igkj5	immunoglobulin kappa joining 5	526 bp downstream
Rr158	regulatory region 158	1502 bp proximal
Rr163	regulatory region 163	1927 bp distal
Rr165	regulatory region 165	1927 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	686 bp upstream
Rr399685	regulatory region 399685	1098 bp upstream
Tssr56950	transcription start site region 56950	1904 bp downstream
Tssr56951	transcription start site region 56951	1878 bp downstream
Tssr56952	transcription start site region 56952	1598 bp downstream
Tssr56953	transcription start site region 56953	902 bp downstream
Tssr56954	transcription start site region 56954	770 bp downstream
Tssr56955	transcription start site region 56955	549 bp downstream
Tssr56956	transcription start site region 56956	1359 bp upstream
Tssr56957	transcription start site region 56957	1981 bp upstream