rs36292538 SNP Detail

Summary

• ID
  rs36292538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:5126552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAGACA CCACAAGAGG
  GCAACAGATC CCATTACAGA TGGTTGTGAG CCACCGTGTG GTTGCTGGGA ATTGAACCCA
  GGACCTCTGG AAGAGCAGTC AGTGCTCTTA ACCACTGGGC TACCTCTCCT GACCTGAGTT
  CTGCCTCATT CCCCTGCTTG GTGTCATTTA TTCAGGTGGG GATGTATGGA AAGCCATTCT
  R
  AGGTGGTACC ACAGTCAGTG GCTTGTCCCT CTCTCATGCT GAGTTTTGAT TTACAATGTG
  GCAGCACTAA GGTGATGAGG CCTGATGGGA AGTCCTTGAG TTGTGTGCAT TGACTGAGAC
  AACTTGTTTG TCAGTGTTGA GGATCAAGTG TTTGGCTGTT ATCCCTGGAT TGCCCAAGAC
  TGGCATCTGC ATCTGCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50580596	NES13651865	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36292538					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580596	NES13651865	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5126552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm46658	predicted gene, 46658			within coordinates
Rr542924	regulatory region 542924			173 bp distal
Tmem151a	transmembrane protein 151A			Intron
				Noncoding-Transcript-Variant