rs36293227 SNP Detail

Summary

• ID
  rs36293227
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69835502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA AGAGAACAGC CACCGTGCTC
  M
  TGGGAACACT AATTTTGGTG GATGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51016671	NES14398560	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A	A	A	C	A	C
ss137860561	ENSMUSSNP2653136	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36293227					SNP	C	C	A	A	A	C	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016671	NES14398560	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69835502 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	1616 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	1744 bp proximal
Rr265514	regulatory region 265514	298 bp proximal
Tssr116527	transcription start site region 116527	1527 bp downstream
Tssr116528	transcription start site region 116528	1546 bp downstream
Tssr116529	transcription start site region 116529	1553 bp downstream
Tssr116530	transcription start site region 116530	1877 bp downstream
Tssr116531	transcription start site region 116531	1932 bp downstream