rs36293472 SNP Detail

Summary

• ID
  rs36293472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60234444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGGAGAT GTAAATGACT
  AAGTGGCCAG TCTCTGGTGA GGGACTGAGT TGACCCTCAG CAAGCACCGA TAAAAGACGC
  GTGCAACATA CAGCATCGAA ACCTTCAGAT CTTCTGCGAG CCCAGCTGTT TCCCCATTTT
  TATTTCCCCT TGATCCTGTG AGTCATCCCA CAACTGCTCT GGCACTGGTC TCTCTCTTTG
  Y
  CATGGTGATC AAATCAGGTT TTTGTGACAT GCCACTCAAA GTTCTAATAC AAATTTCCTT
  ATTTTCACTT ACTGGACACA CTCTTTTGGG GGAAAAGTCG GAAGAGAAAT CCTGCTTGCA
  TCGATCAAGT CAGCAGAAAG ACTGCCCTGC CCCCACTTGC CTAAGGCAAG AGATCCTGTC
  CTTTTTGTTT GTTTGTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50866232	NES14170316	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		T
ss323325361	CHEV_10_59861413	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36293472					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866232	NES14170316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60234444 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	1199 bp upstream
Rr215449	regulatory region 215449	244 bp distal
Rr223077	regulatory region 223077	within coordinates
Rr228097	regulatory region 228097	358 bp proximal
Tssr93633	transcription start site region 93633	1084 bp upstream
Tssr93634	transcription start site region 93634	1137 bp upstream
Tssr93635	transcription start site region 93635	1184 bp upstream