rs36293805 SNP Detail

Summary

• ID
  rs36293805
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97804528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATGGCAGA AGGTTGACTA CTTGTCTCGC CGTGTCTCTG
  GGCATCTGAA GATGGTTGAG GTACATTGCT TTGGTCCTTT CTGGGGAGTG TATCACAGCC
  W
  CGGACCTCTT GGAAATATTG TCTAGATTAG TGGTTTTGGT GATTGCTTTG TTAGGATGGT
  GGGCCGCCTT GTTCGTGGGT TTGGAGGTTT AAATGAGAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51375353	NES13725657	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36293805					SNP	A	A	A	A	A	A	A	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375353	NES13725657	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97804528 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mitf	melanogenesis associated transcription factor			Intron
				mRNA-UTR
Rr635225	regulatory region 635225			1368 bp proximal
Tssr1945	transcription start site region 1945			251 bp downstream
Tssr57866	transcription start site region 57866			598 bp downstream
Tssr57867	transcription start site region 57867			325 bp downstream
Tssr57868	transcription start site region 57868			303 bp downstream
Tssr57869	transcription start site region 57869			265 bp downstream
Tssr57870	transcription start site region 57870			106 bp downstream
Tssr57871	transcription start site region 57871			88 bp downstream
Tssr57872	transcription start site region 57872			672 bp upstream
Tssr57873	transcription start site region 57873			723 bp upstream
Tssr57874	transcription start site region 57874			733 bp upstream
Tssr57875	transcription start site region 57875			750 bp upstream
Tssr57876	transcription start site region 57876			785 bp upstream
Tssr57877	transcription start site region 57877			1693 bp upstream
Tssr57878	transcription start site region 57878			1737 bp upstream
Tssr57879	transcription start site region 57879			1753 bp upstream
Tssr57880	transcription start site region 57880			1806 bp upstream