rs36293812 SNP Detail

Summary

• ID
  rs36293812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61006352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAACAG ACCTTTCTAG
  AAAAGCTTAT AGATCATCAG CTACACATTT AATGAGTGTT TTAATAGTTG TGTATATGCT
  GATTTATATG GTCTATAAAA ACAATATATG TTGAAGAAAA GATGCCTACT GTAACATTGT
  ATCAAATACA TGGGAGAAAT AAATGAAGCC AACTTAGTGT AAGGAATGTC ACCGGGCAGT
  Y
  TTACACTCAA GCAAGCTGAG CCTTAGCAAA GATGGCTCGC AAGCTGGCCT GGTGAAGCAG
  ACCTGTCCCC AGCACTTGGA GTGCTGGGGC AGGACCATGA GTTCTAAGCC GGTCTGAGCT
  GCATAGAGAG ACCCTGACTG GGAAAAGTGT TCCCTTGATT TCTGTTAAAT GTTCGTGTGT
  GGGGTCTGCA TAAGGATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51523295	NES14633429	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36293812					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51523295	NES14633429	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61006352 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf9	C1q and tumor necrosis factor related protein 9	within coordinates
Gm34997	predicted gene, 34997	860 bp upstream
Rr289661	regulatory region 289661	449 bp proximal
Rr289662	regulatory region 289662	1849 bp proximal
Tssr125961	transcription start site region 125961	809 bp downstream
Tssr125962	transcription start site region 125962	785 bp downstream
Tssr125963	transcription start site region 125963	766 bp downstream