rs36293893 SNP Detail

Summary

• ID
  rs36293893
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72323456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGGAGC TCCCGGGAGA
  CGGCTTTTCC AATGCCTGTG CCCCCGCCGG TGACCACGGC CACTTGGTTC TTCAGCAACC
  CGGCCGCTAG GTAGCTCTGA CCAGTCTTCC AAGAGCCCAT GGCCACAAAG TGTCTGTCTC
  TGAGTTCTTG CTAAAGCTAG ACCACGTGTT CCTCAGAAGT AGCTCTATTA GTAGCAGTCC
  K
  TGGCCACGTA ACCAAACAGA CCCCGCCCCT AAGTCCGCGT GGTCCCGCCT CAGGCCCCGC
  CCAGGCCCCG CCTTCGCGGC GCGCTAGGCC TCCTCCCAGA GCTGGACCGC TCCTGGCGGC
  CGCCCGCAGC CGTCTGCATC CTCAGCTTCC CTCCTGGGTC CCAGTGAAGG TGTGGGTGAG
  ACTCCTCGTT CGATTTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51274564	NES14276909	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs36293893					SNP	T	T	T	T	T	G	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274564	NES14276909	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72323456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	within coordinates
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Rr412794	regulatory region 412794	1311 bp distal
Rr412795	regulatory region 412795	within coordinates
Rr412796	regulatory region 412796	83 bp proximal
Tmem169	transmembrane protein 169	98 bp upstream
Tssr114	transcription start site region 114	18 bp upstream
Tssr115	transcription start site region 115	4 bp upstream
Tssr116	transcription start site region 116	8 bp downstream
Tssr7298	transcription start site region 7298	70 bp upstream
Tssr12164	transcription start site region 12164	69 bp upstream
Tssr12165	transcription start site region 12165	31 bp upstream