rs36294314 SNP Detail

Summary

• ID
  rs36294314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10611509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAAACCA CCAATACACT
  ATCCTTACCA TCTAGTGGGC TTGGGGAGAG TCAAAACTGC CTCGCTTCAG TGCCCTGGGT
  TTGAGTGTCC ACAAGTCTCA CCTACTGAGA ATTCAGATTG GATTCTATGG AAACTCAAAA
  ACCTTGTTCC TGAAGTTTCT TTCCAACTTG GTTCGAAGCC TTCAGTCATT CTGTGGAAAG
  Y
  GACTCCCAAA CCCAGGCTGG GGGTGTGGGC CGAGGGTGAA ACCCCGCCCT CGGGGTCCCT
  GATCTTTGCT CCCGCCCCAG GCTCCACGCC TCCCGGAGAG GCACCGGCGG GCGGCGCTCC
  TTTTGTGTGT TTCTTTCCAA GGTGCAAGGA CCCCCACCCC CACCCGCCTA GGCAGTCCTC
  CCCTAACCAC CAGCCCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601058	NES13642631	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36294314					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601058	NES13642631	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10611509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	27 bp proximal
Cpgi10617	CpG island 10617	832 bp proximal
Rr362969	regulatory region 362969	within coordinates
Tssr155079	transcription start site region 155079	78 bp upstream
Tssr155080	transcription start site region 155080	155 bp upstream
Tssr155081	transcription start site region 155081	168 bp upstream
Vwce	von Willebrand factor C and EGF domains	73 bp upstream