rs36294618 SNP Detail

Summary

• ID
  rs36294618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133989563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAAGTGG GAATGGGGTC
  TGTTGAATAG GACTTTCTAA GCACACGATT TCAGCCATAG TTCAGTCTCT AACAGATGGG
  AAGACCTTTG CAAAATACTC TTTTGCCCCC AAGCCCTATT TCAGTTTCTA TTGAATAGCC
  TTAAATGTGT GCACACTGAC CTGGGGATGA TGATAATGTC AGTATTTAAT AGCAGCTACT
  R
  TGAGCTTCAG ATGAACCAGC ACTGTCTGGA TTCTTCTATC CGCCAAACCC ACAACAGAAT
  TAACCAGAGA AACTTTTATC CCATGGCAAA ACAATTGATA AGCTTCGTAA CACCTACTGT
  AATGAGGCAT GCAGGTAATA TGTCTTTTCC TGGGGACCCC TTCCAATCTT GATCATTAAG
  TTGTAATCTT CCAGCCAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373638	NES14471785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36294618					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373638	NES14471785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133989563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	386 bp distal
Cpgi759	CpG island 759	1302 bp proximal
Gm19497	predicted gene, 19497	878 bp upstream
Gm57140	predicted gene, 57140	89 bp downstream
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	1763 bp distal
Tssr8846	transcription start site region 8846	735 bp downstream
Tssr8847	transcription start site region 8847	718 bp downstream
Tssr8848	transcription start site region 8848	675 bp downstream
Tssr8849	transcription start site region 8849	1628 bp upstream
Tssr8850	transcription start site region 8850	1695 bp upstream
Tssr13763	transcription start site region 13763	1010 bp upstream
Tssr13764	transcription start site region 13764	952 bp upstream
Tssr13765	transcription start site region 13765	866 bp upstream
Tssr13766	transcription start site region 13766	1457 bp downstream
Tssr13767	transcription start site region 13767	1490 bp downstream
Tssr13768	transcription start site region 13768	1530 bp downstream
Tssr13769	transcription start site region 13769	1541 bp downstream