rs36294912 SNP Detail

Summary

• ID
  rs36294912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:118282625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTGATT CTGGGCAGAA
  GTCACAGCCT CCCAACAAAT GCCTATTTCG TCGGCCTATT TCCCACATTC AACATGGAAG
  GCAGTCCCAC TAAGAAAGGC CTGCAGAGCC TGGGTGCCAG CTCCGTTCTC TTCCTCATGC
  TATAGACCTC CCCTATCACC CTTAAGCCTG CCTGCTGGTG ACTCACTGCC CCTTAACTTA
  Y
  CCCACTGTAA ACAGACACTT ACTCCCAGCA GTGACAAGAG AACTAGAGAC TGAGGCTCAG
  TCCACACAGT GGAGGGCCCA CACAACACAC AAAGCAGTAT GACCAACTCT AAAGGGCACC
  TAACTGCTCG GAAGGTCTGC TGTGGTGCAT GGGGAGAAAG ATGAAGCCCA CCAGGATGCA
  GTGACCACCA GCACTGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51188621	NES13833140	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36294912					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51188621	NES13833140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118282625 () rs orientation: forward

Symbol	Name	Function Class
Fbxw8	F-box and WD-40 domain protein 8	Intron
Rr618824	regulatory region 618824	474 bp distal
Rr618825	regulatory region 618825	1379 bp proximal