rs36296088 SNP Detail

Summary

• ID
  rs36296088
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38284465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTTAATG TCATATTTCC
  TTCAATGACA CTTCCAACCA GGACTCGGGC TACGAACATG ACAGTGCCTC TGGAATCATA
  TGAACAACTC TTGTGTGAAT ACATGGCTTC TTTTGTAAAA TAATTTCCTA GAAATGATCA
  GAAAAAAAGT GGAGAATTAC TATCAGCGAG CATAGGTTGT AACAGAATAC AAAGAATCAG
  W
  CACTGATATG AATGAAAGAA ACATCTGCCA ACAACACCTG ACTGACACCT ATAAGCCCTC
  AATAGTTAAT CCTCAGCATC AACATAACTA ACTGCATGCA GTTCCAATCA GGTGGGAGGC
  ACGTCTCTGA TAACACTTCC AGAGAGATCT CCCAGTACAC CCACCTGTAT GCAGGTAACG
  TCAGTCATTC CAAGGGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51288661	NES13775841	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36296088					SNP	T	T	T	T	T	A	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288661	NES13775841	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38284465 () rs orientation: forward

Symbol	Name	Function Class
Gm53283	predicted gene, 53283	377 bp downstream
Tssr60393	transcription start site region 60393	1225 bp upstream
Tssr60394	transcription start site region 60394	838 bp upstream
Tssr60395	transcription start site region 60395	762 bp upstream
Tssr60396	transcription start site region 60396	219 bp upstream
Tssr60397	transcription start site region 60397	734 bp downstream
Zc3hav1	zinc finger CCCH type, antiviral 1	within coordinates