rs36296453 SNP Detail

Summary

• ID
  rs36296453
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51727321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATACTTT ACAAGTCCAC
  CCACCAACTA ATTTGCGATC TTTAAACATG TATTATTTAT TCCTAAAAGG CACCTGCCTC
  AAAAAGCCAT TGAAAGCTGA AACTGTCAGC TAAGTAAACA ACCTAACATT TCTTTTTCAC
  AGTACTATGC AAGTGATACT TAACTGGAGG CATAAAGCTT TCTAAACTTA AGCTCTTCCC
  K
  GCATCTTTCA AACTCTGACA TCCACAGGTA TTACAGTCAG TAACAAGCAC AGCTTACAGT
  CTCCCATGCT CACCACATAC AGGTTTTCAC ATAATCCAAA CGATACACCA ATGCCTAACT
  ACTTCTCAAT CCCATCTGAA CACATGAGGT AACTAAAGCT GGTTAAGGCC AACTTCTTAG
  GGCCACAGAG ACTAAGTCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51665671	NES14579674	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36296453					SNP	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665671	NES14579674	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51727321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	1109 bp proximal
Eif3h	eukaryotic translation initiation factor 3, subunit H	within coordinates
Rr306972	regulatory region 306972	1921 bp distal
Rr311732	regulatory region 311732	79 bp proximal
Rr404375	regulatory region 404375	1520 bp upstream
Tssr134286	transcription start site region 134286	1523 bp downstream
Tssr134287	transcription start site region 134287	1573 bp downstream