rs36296481 SNP Detail

Summary

• ID
  rs36296481
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:93297508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAACTTGT GGCCAGCCCA
  AACTCCCAGG CTTCACATCC CGGTTGTGCT TGGTTATCGC CCACGATGTA AGCCCCTTTG
  GTCTTCTAAT TGTTTGAGCC TTAACTCTCC GCGCTGTTTC GTGCTTCCTC TCGATTTGGG
  GGTACCACTG CTTCTCCTTC CTTAGTTCAC CCTGAGCGCA TCGTCTGTGC TCCTGGAATC
  K
  TATTTTGTCT GCTTAGCAAA CACTTATTAG CCTTGTTTTG AAACTGTCTT GCGTTTTCTG
  ACTCTTTAAC AAAGCTGTGG CTTTTGCCTT TAAATTGAAC TTTTTTTTTT TCCCCTGACA
  TCTGGGTTTT AAGATTTGGT GTTGCTCCAT CTGTATCGAA TTGATTGCAT TTCCTTGATT
  TTTTTTTTCT TTCAGTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51751338	NES14554760	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36296481					SNP	T	T	T	T	T	T	G	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751338	NES14554760	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:93297508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7581	CpG island 7581	729 bp distal
Pphln1	periphilin 1	within coordinates
Rr312331	regulatory region 312331	within coordinates
Tssr132763	transcription start site region 132763	1634 bp downstream
Tssr132764	transcription start site region 132764	1615 bp downstream
Tssr132765	transcription start site region 132765	1204 bp downstream
Tssr132766	transcription start site region 132766	1189 bp downstream
Tssr135972	transcription start site region 135972	1426 bp upstream
Tssr135973	transcription start site region 135973	1284 bp upstream
Tssr135974	transcription start site region 135974	1275 bp upstream
Tssr135975	transcription start site region 135975	997 bp upstream
Zcrb1	zinc finger CCHC-type and RNA binding motif 1	1290 bp upstream