rs36296511 SNP Detail

Summary

• ID
  rs36296511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7459476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCTCTG ATCTGAGTCG
  AGCTTGCCAG TCAGCTCCCA CCAGCAGGCA GACTTGTATA CAAAAGAAAC TAAAGGAGGC
  CGCCAGCGTC CCTCCTAGTC TTTTCACACA CAAGAGAGAA GGGGGTTCAA GCAGCCCAGG
  CTTTGTCTGA ATTCTTTCCC CTGCAGCAAT CGTTCCCTTT TGTTATGCTG CTATTGAGAA
  Y
  AGGCCATCGA AAACAAGAAA TCAAAACATG GTGATGGCTT GGCAAGACTG TATTTATTAT
  CTTCTAGAAT ATAGCAACTG ACTGCGTGTC CCCACCCCCA CGATGCACCA CCGGTGAAGA
  GCCGGCTGTG TTGCAGATGC AGCCAAGGAT CCATCTTGGA CTATCAGCAG CTCCCTCCCA
  AATCTTCCCA TGCTATTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50591960	NES13643745	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36296511					SNP	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50591960	NES13643745	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7459476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	381 bp proximal
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	within coordinates
Rr543686	regulatory region 543686	1081 bp proximal
Rtn3	reticulon 3	within coordinates
Tssr5428	transcription start site region 5428	870 bp downstream
Tssr5429	transcription start site region 5429	948 bp downstream
Tssr5430	transcription start site region 5430	1041 bp downstream
Tssr5431	transcription start site region 5431	1177 bp downstream
Tssr157986	transcription start site region 157986	225 bp downstream
Tssr157987	transcription start site region 157987	974 bp downstream
Tssr157988	transcription start site region 157988	1026 bp downstream
Tssr157989	transcription start site region 157989	1088 bp downstream
Tssr157990	transcription start site region 157990	1101 bp downstream
Tssr157991	transcription start site region 157991	1130 bp downstream