rs36296756 SNP Detail

Summary

• ID
  rs36296756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129308808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCTCTA GACTCGGAGG
  GCTGAGTTTC TTTGGAATCA AGACTAGAGC AAGATTGATA GATGGGAGAG ATAGCACCAC
  TCCAGCGTGA TGGTTCTGCA TGATGGGCCA CAAGACATCT CACTGGCCCT GTCCTCTAAC
  GGTAGCACGC TCCAACGGGT GTCTCGCTAG CTGCCCTGAT TGGCTGCTGG TCGCCATGGG
  R
  AAGCCTGATT AGCATCCTCT CCCTTCAGCT ATCCAGTCAA GACTTCCCCT TCCCTGGTCT
  TTGTATAGTG TCTCCCGTGT AAACTATCTG ATAAAGCCCG TGTAACTTTA GAGTTGTTTG
  AACTAACTGT AAATCACACT TATCCTTTCT TGATCTTTGA GCCCCACATC CAGTTTTACT
  TTGCTTTTAA TCGCTTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51417877	NES13721942	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36296756					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51417877	NES13721942	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129308808 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	49 bp upstream
Rr133301	regulatory region 133301	1993 bp proximal
Tssr63594	transcription start site region 63594	66 bp upstream
Tssr63595	transcription start site region 63595	54 bp upstream
Tssr63596	transcription start site region 63596	38 bp upstream