rs36297157 SNP Detail

Summary

• ID
  rs36297157
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:42174306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGAAATGT AAGTTTACGT TAAATAGTAT ACTGCTTTGG
  CAGAAAAAAA ACCCACAATT TTTGACTTTA AAACATGGTT ATCAATTAAA TGGGCCTGGG
  S
  TATAATTCAG GGATATTCCT TTGGTGTAGT ATGTCCAAAG CCTTGGTTCC TATCCCAGCA
  TCAGATAAAT AAGTAAACAT ATATAAATCC ACTATTATAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52006410	NES15025803	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36297157					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006410	NES15025803	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42174306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	644 bp proximal
Gm10690	predicted gene 10690	1348 bp upstream
Rr368719	regulatory region 368719	1493 bp upstream
Rr401326	regulatory region 401326	1183 bp upstream
Rr677189	regulatory region 677189	585 bp proximal
Rr677190	regulatory region 677190	1180 bp proximal
Rr677191	regulatory region 677191	1460 bp proximal
Sc5d	sterol-C5-desaturase	Intron
Tssr84545	transcription start site region 84545	1461 bp upstream
Tssr89017	transcription start site region 89017	869 bp upstream
Tssr89018	transcription start site region 89018	1194 bp downstream
Tssr89019	transcription start site region 89019	1216 bp downstream