rs36297228 SNP Detail

Summary

• ID
  rs36297228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:96860064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAATGTT CATGCTACTA
  TAGATTTGAT AGTTGTAAGA AAGACTATAT GCCCTAAAAT GTTTACTGTC AGCCCTTTAC
  AGGAAACTTT AATGATAAGT ATTGTACCCT AGGCTGTCTC TTTTTCAGAA TTTTTAGTAT
  TAAAGATTCT CTAATTTTCA TAGAGCATCT AAGAAAATCC TTAGTAATTC AAGAAGAATC
  R
  TTTTATTTAG TATAATACTT AAGGCAGAAC AAAAGAGTCT AGAATTTTAG AAGTACTTTC
  AGTTTTCAGG GCTGAAGCTA AAAGGATCTT CAGAAAGTTC CTTTTTCCTT AAAAGACAAT
  TTACCTATAA GAACTAGCCT AGTTCAACTT GATTATGTAG ACTAACCTAA AACAAACCAG
  GTTCTTGTCC CATATGTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51918196	NES14942302	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36297228					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51918196	NES14942302	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96860064 () rs orientation: forward

Symbol	Name	Function Class
Gab2	growth factor receptor bound protein 2-associated protein 2	within coordinates
Tssr67956	transcription start site region 67956	634 bp downstream
Tssr67957	transcription start site region 67957	530 bp downstream
Tssr67958	transcription start site region 67958	568 bp upstream
Tssr67959	transcription start site region 67959	645 bp upstream
Tssr73570	transcription start site region 73570	809 bp upstream
Tssr73571	transcription start site region 73571	303 bp downstream
Tssr73572	transcription start site region 73572	382 bp downstream