rs36298689 SNP Detail

Summary

• ID
  rs36298689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11075829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAACTC CTTTTCCTTT
  GGACATTCTG CATTATTTAT GTTTAGATAT ACATCACTTG GATTGCTCAG TTACTATCCT
  TATCTCATGC CTCGTTTTCT TTTCTGGTTT CTCTTTCTCT TCTTCTGCTG GAATGGCCTG
  GAGGCAGGTG AGTTGCCTCA AAAAATCACC CTGCCACTGT AATTTGTCTT ATGGCAATCC
  R
  GTCCTCTTTG CTATTATTTA GCTCAGAGCT GGAGGCAGTA GTGTCTGTGA GAGGGAAAGA
  GAGGTTTCCT GTTCCTTCAG AGGAAGAAGA ACCAATTTCT GAGGCATGTG ACCAGGAGTT
  ATGTTGCCTA AACCATAATA ACAGTCTTAG GATACAGATG CAGATTGCAG AGTGGGAGGG
  CAGAGGAAGT TCGGTACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50597968	NES13641141	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36298689					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50597968	NES13641141	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11075829 () rs orientation: forward

Symbol	Name	Function Class
Ms4a20	membrane-spanning 4-domains, subfamily A, member 20	Intron
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158291	transcription start site region 158291	1559 bp upstream